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Species belonging to selected taxon:

Populus x canadensis



ABOUT THIS RECORD

ID: MNEST045069
species: Populus x canadensis
miRNA family: MIR1444
source: microPC, original name: miR1444

Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCACATTCGGTCAATGTTC

miRNA*
ATGTTGACCGAATATGGATG

mismatches: 1
bulges: 0

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pre-miRNA
GAATGTTGACCGAATATGGATGAAAAGTTGTTTTCCGTTTCCTTTCCTCCACATTCGGTCAATGTTC

dot-bracket secondary structure
(((((((((((((((.((((.((((.(..(........)..))))).)))).)))))))))))))))


SIMILARITIES
miRBase ptc-MIR1444a: 4e-30

PMRD ptc-miRf10526-akr: 4e-30

microPC miR1444: 2e-32
UniProt no hits

RFAM MIR1444: 7e-29

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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